GenomicInterpretation

new GenomicInterpretation(opt_dataopt)

Description:

Generated by JsPbCodeGenerator.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 89

Parameters:

Name	Type	Attributes	Description
`opt_data`	Array	<optional>	Optional initial data array, typically from a server response, or constructed directly in Javascript. The array is used in place and becomes part of the constructed object. It is not cloned. If no data is provided, the constructed object will be empty, but still valid.

Extends

jspb.Message

Members

(static) CallCase :number

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 598

Properties:

Name	Type	Description
`CALL_NOT_SET`	number
`GENE`	number
`VARIANT_INTERPRETATION`	number

Type:

number

(static) InterpretationStatus :number

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 765

Properties:

Name	Type	Description
`UNKNOWN_STATUS`	number
`REJECTED`	number
`CANDIDATE`	number
`CONTRIBUTORY`	number
`CAUSATIVE`	number

Type:

number

(static) displayName

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 98

(private, static, constant) oneofGroups_

Description:

Oneof group definitions for this message. Each group defines the field numbers belonging to that group. When of these fields' value is set, all other fields in the group are cleared. During deserialization, if multiple fields are encountered for a group, only the last value seen will be kept.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 593

Oneof group definitions for this message. Each group defines the field numbers belonging to that group. When of these fields' value is set, all other fields in the group are cleared. During deserialization, if multiple fields are encountered for a group, only the last value seen will be kept.

Methods

clearGene() → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Description:

Clears the message field making it undefined.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 832

Returns:

returns this

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

clearVariantInterpretation() → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Description:

Clears the message field making it undefined.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 869

Returns:

returns this

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

getCallCase() → {proto.org.phenopackets.schema.v2.core.GenomicInterpretation.CallCase}

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 607

Returns:

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation.CallCase

getGene() → (nullable) {proto.org.ga4gh.vrsatile.v1.GeneDescriptor}

Description:

optional org.ga4gh.vrsatile.v1.GeneDescriptor gene = 3;

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 813

Returns:

Type: proto.org.ga4gh.vrsatile.v1.GeneDescriptor

getInterpretationStatus() → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus}

Description:

optional InterpretationStatus interpretation_status = 2;

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 795

Returns:

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus

getSubjectOrBiosampleId() → {string}

Description:

optional string subject_or_biosample_id = 1;

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 777

Returns:

Type: string

getVariantInterpretation() → (nullable) {proto.org.phenopackets.schema.v2.core.VariantInterpretation}

Description:

optional VariantInterpretation variant_interpretation = 4;

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 850

Returns:

Type: proto.org.phenopackets.schema.v2.core.VariantInterpretation

hasGene() → {boolean}

Description:

Returns whether this field is set.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 841

Returns:

Type: boolean

hasVariantInterpretation() → {boolean}

Description:

Returns whether this field is set.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 878

Returns:

Type: boolean

serializeBinary() → (non-null) {Uint8Array}

Description:

Serializes the message to binary data (in protobuf wire format).

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 713

Returns:

Type: Uint8Array

setGene(value) → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 823

Parameters:

Name	Type	Description
`value`	proto.org.ga4gh.vrsatile.v1.GeneDescriptor \| undefined

Returns:

returns this

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

setInterpretationStatus(valuenon-null) → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 804

Parameters:

Name	Type	Description
`value`	proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus

Returns:

returns this

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

setSubjectOrBiosampleId(value) → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 786

Parameters:

Name	Type	Description
`value`	string

Returns:

returns this

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

setVariantInterpretation(value) → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 860

Parameters:

Name	Type	Description
`value`	proto.org.phenopackets.schema.v2.core.VariantInterpretation \| undefined

Returns:

returns this

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

toObject(opt_includeInstanceopt) → (non-null) {Object}

Description:

Creates an object representation of this proto. Field names that are reserved in JavaScript and will be renamed to pb_name. Optional fields that are not set will be set to undefined. To access a reserved field use, foo.pb_, eg, foo.pb_default. For the list of reserved names please see: net/proto2/compiler/js/internal/generator.cc#kKeyword.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 626

Parameters:

Name	Type	Attributes	Description
`opt_includeInstance`	boolean	<optional>	Deprecated. whether to include the JSPB instance for transitional soy proto support: http://goto/soy-param-migration

Returns:

Type: Object

(static) deserializeBinary(bytes) → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Description:

Deserializes binary data (in protobuf wire format).

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 661

Parameters:

Name	Type	Description
`bytes`	jspb.ByteSource	The bytes to deserialize.

Returns:

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

(static) deserializeBinaryFromReader(msgnon-null, readernon-null) → (non-null) {proto.org.phenopackets.schema.v2.core.GenomicInterpretation}

Description:

Deserializes binary data (in protobuf wire format) from the given reader into the given message object.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 675

Parameters:

Name	Type	Description
`msg`	proto.org.phenopackets.schema.v2.core.GenomicInterpretation	The message object to deserialize into.
`reader`	jspb.BinaryReader	The BinaryReader to use.

Returns:

Type: proto.org.phenopackets.schema.v2.core.GenomicInterpretation

(static) serializeBinaryToWriter(messagenon-null, writernon-null)

Description:

Serializes the given message to binary data (in protobuf wire format), writing to the given BinaryWriter.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 727

Parameters:

Name	Type	Description
`message`	proto.org.phenopackets.schema.v2.core.GenomicInterpretation
`writer`	jspb.BinaryWriter

(static) toObject(includeInstance, msgnon-null) → (non-null) {Object}

Description:

Static version of the {@see toObject} method.

Source:

phenopackets/schema/v2/core/interpretation_pb.js, line 640

Parameters:

Name	Type	Description
`includeInstance`	boolean \| undefined	Deprecated. Whether to include the JSPB instance for transitional soy proto support: http://goto/soy-param-migration
`msg`	proto.org.phenopackets.schema.v2.core.GenomicInterpretation	The msg instance to transform.

Returns:

Type: Object