phenopackets/schema/v2/core/interpretation_pb.js

// source: phenopackets/schema/v2/core/interpretation.proto
/**
 * @fileoverview
 * @enhanceable
 * @suppress {missingRequire} reports error on implicit type usages.
 * @suppress {messageConventions} JS Compiler reports an error if a variable or
 *     field starts with 'MSG_' and isn't a translatable message.
 * @public
 */
// GENERATED CODE -- DO NOT EDIT!
/* eslint-disable */
// @ts-nocheck

var jspb = require('google-protobuf');
var goog = jspb;
var global =
    (typeof globalThis !== 'undefined' && globalThis) ||
    (typeof window !== 'undefined' && window) ||
    (typeof global !== 'undefined' && global) ||
    (typeof self !== 'undefined' && self) ||
    (function () { return this; }).call(null) ||
    Function('return this')();

var phenopackets_schema_v2_core_base_pb = require('../../../../phenopackets/schema/v2/core/base_pb.js');
goog.object.extend(proto, phenopackets_schema_v2_core_base_pb);
var phenopackets_vrsatile_v1_vrsatile_pb = require('../../../../phenopackets/vrsatile/v1/vrsatile_pb.js');
goog.object.extend(proto, phenopackets_vrsatile_v1_vrsatile_pb);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.AcmgPathogenicityClassification', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.Diagnosis', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.GenomicInterpretation', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.GenomicInterpretation.CallCase', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.Interpretation', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.Interpretation.ProgressStatus', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.TherapeuticActionability', null, global);
goog.exportSymbol('proto.org.phenopackets.schema.v2.core.VariantInterpretation', null, global);
/**
 * Generated by JsPbCodeGenerator.
 * @param {Array=} opt_data Optional initial data array, typically from a
 * server response, or constructed directly in Javascript. The array is used
 * in place and becomes part of the constructed object. It is not cloned.
 * If no data is provided, the constructed object will be empty, but still
 * valid.
 * @extends {jspb.Message}
 * @constructor
 */
proto.org.phenopackets.schema.v2.core.Interpretation = function(opt_data) {
  jspb.Message.initialize(this, opt_data, 0, -1, null, null);
};
goog.inherits(proto.org.phenopackets.schema.v2.core.Interpretation, jspb.Message);
if (goog.DEBUG && !COMPILED) {
  /**
   * @public
   * @override
   */
  proto.org.phenopackets.schema.v2.core.Interpretation.displayName = 'proto.org.phenopackets.schema.v2.core.Interpretation';
}
/**
 * Generated by JsPbCodeGenerator.
 * @param {Array=} opt_data Optional initial data array, typically from a
 * server response, or constructed directly in Javascript. The array is used
 * in place and becomes part of the constructed object. It is not cloned.
 * If no data is provided, the constructed object will be empty, but still
 * valid.
 * @extends {jspb.Message}
 * @constructor
 */
proto.org.phenopackets.schema.v2.core.Diagnosis = function(opt_data) {
  jspb.Message.initialize(this, opt_data, 0, -1, proto.org.phenopackets.schema.v2.core.Diagnosis.repeatedFields_, null);
};
goog.inherits(proto.org.phenopackets.schema.v2.core.Diagnosis, jspb.Message);
if (goog.DEBUG && !COMPILED) {
  /**
   * @public
   * @override
   */
  proto.org.phenopackets.schema.v2.core.Diagnosis.displayName = 'proto.org.phenopackets.schema.v2.core.Diagnosis';
}
/**
 * Generated by JsPbCodeGenerator.
 * @param {Array=} opt_data Optional initial data array, typically from a
 * server response, or constructed directly in Javascript. The array is used
 * in place and becomes part of the constructed object. It is not cloned.
 * If no data is provided, the constructed object will be empty, but still
 * valid.
 * @extends {jspb.Message}
 * @constructor
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation = function(opt_data) {
  jspb.Message.initialize(this, opt_data, 0, -1, null, proto.org.phenopackets.schema.v2.core.GenomicInterpretation.oneofGroups_);
};
goog.inherits(proto.org.phenopackets.schema.v2.core.GenomicInterpretation, jspb.Message);
if (goog.DEBUG && !COMPILED) {
  /**
   * @public
   * @override
   */
  proto.org.phenopackets.schema.v2.core.GenomicInterpretation.displayName = 'proto.org.phenopackets.schema.v2.core.GenomicInterpretation';
}
/**
 * Generated by JsPbCodeGenerator.
 * @param {Array=} opt_data Optional initial data array, typically from a
 * server response, or constructed directly in Javascript. The array is used
 * in place and becomes part of the constructed object. It is not cloned.
 * If no data is provided, the constructed object will be empty, but still
 * valid.
 * @extends {jspb.Message}
 * @constructor
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation = function(opt_data) {
  jspb.Message.initialize(this, opt_data, 0, -1, null, null);
};
goog.inherits(proto.org.phenopackets.schema.v2.core.VariantInterpretation, jspb.Message);
if (goog.DEBUG && !COMPILED) {
  /**
   * @public
   * @override
   */
  proto.org.phenopackets.schema.v2.core.VariantInterpretation.displayName = 'proto.org.phenopackets.schema.v2.core.VariantInterpretation';
}



if (jspb.Message.GENERATE_TO_OBJECT) {
/**
 * Creates an object representation of this proto.
 * Field names that are reserved in JavaScript and will be renamed to pb_name.
 * Optional fields that are not set will be set to undefined.
 * To access a reserved field use, foo.pb_<name>, eg, foo.pb_default.
 * For the list of reserved names please see:
 *     net/proto2/compiler/js/internal/generator.cc#kKeyword.
 * @param {boolean=} opt_includeInstance Deprecated. whether to include the
 *     JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @return {!Object}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.toObject = function(opt_includeInstance) {
  return proto.org.phenopackets.schema.v2.core.Interpretation.toObject(opt_includeInstance, this);
};


/**
 * Static version of the {@see toObject} method.
 * @param {boolean|undefined} includeInstance Deprecated. Whether to include
 *     the JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @param {!proto.org.phenopackets.schema.v2.core.Interpretation} msg The msg instance to transform.
 * @return {!Object}
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.Interpretation.toObject = function(includeInstance, msg) {
  var f, obj = {
id: jspb.Message.getFieldWithDefault(msg, 1, ""),
progressStatus: jspb.Message.getFieldWithDefault(msg, 2, 0),
diagnosis: (f = msg.getDiagnosis()) && proto.org.phenopackets.schema.v2.core.Diagnosis.toObject(includeInstance, f),
summary: jspb.Message.getFieldWithDefault(msg, 4, "")
  };

  if (includeInstance) {
    obj.$jspbMessageInstance = msg;
  }
  return obj;
};
}


/**
 * Deserializes binary data (in protobuf wire format).
 * @param {jspb.ByteSource} bytes The bytes to deserialize.
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.deserializeBinary = function(bytes) {
  var reader = new jspb.BinaryReader(bytes);
  var msg = new proto.org.phenopackets.schema.v2.core.Interpretation;
  return proto.org.phenopackets.schema.v2.core.Interpretation.deserializeBinaryFromReader(msg, reader);
};


/**
 * Deserializes binary data (in protobuf wire format) from the
 * given reader into the given message object.
 * @param {!proto.org.phenopackets.schema.v2.core.Interpretation} msg The message object to deserialize into.
 * @param {!jspb.BinaryReader} reader The BinaryReader to use.
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.deserializeBinaryFromReader = function(msg, reader) {
  while (reader.nextField()) {
    if (reader.isEndGroup()) {
      break;
    }
    var field = reader.getFieldNumber();
    switch (field) {
    case 1:
      var value = /** @type {string} */ (reader.readString());
      msg.setId(value);
      break;
    case 2:
      var value = /** @type {!proto.org.phenopackets.schema.v2.core.Interpretation.ProgressStatus} */ (reader.readEnum());
      msg.setProgressStatus(value);
      break;
    case 3:
      var value = new proto.org.phenopackets.schema.v2.core.Diagnosis;
      reader.readMessage(value,proto.org.phenopackets.schema.v2.core.Diagnosis.deserializeBinaryFromReader);
      msg.setDiagnosis(value);
      break;
    case 4:
      var value = /** @type {string} */ (reader.readString());
      msg.setSummary(value);
      break;
    default:
      reader.skipField();
      break;
    }
  }
  return msg;
};


/**
 * Serializes the message to binary data (in protobuf wire format).
 * @return {!Uint8Array}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.serializeBinary = function() {
  var writer = new jspb.BinaryWriter();
  proto.org.phenopackets.schema.v2.core.Interpretation.serializeBinaryToWriter(this, writer);
  return writer.getResultBuffer();
};


/**
 * Serializes the given message to binary data (in protobuf wire
 * format), writing to the given BinaryWriter.
 * @param {!proto.org.phenopackets.schema.v2.core.Interpretation} message
 * @param {!jspb.BinaryWriter} writer
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.Interpretation.serializeBinaryToWriter = function(message, writer) {
  var f = undefined;
  f = message.getId();
  if (f.length > 0) {
    writer.writeString(
      1,
      f
    );
  }
  f = message.getProgressStatus();
  if (f !== 0.0) {
    writer.writeEnum(
      2,
      f
    );
  }
  f = message.getDiagnosis();
  if (f != null) {
    writer.writeMessage(
      3,
      f,
      proto.org.phenopackets.schema.v2.core.Diagnosis.serializeBinaryToWriter
    );
  }
  f = message.getSummary();
  if (f.length > 0) {
    writer.writeString(
      4,
      f
    );
  }
};


/**
 * @enum {number}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.ProgressStatus = {
  UNKNOWN_PROGRESS: 0,
  IN_PROGRESS: 1,
  COMPLETED: 2,
  SOLVED: 3,
  UNSOLVED: 4
};

/**
 * optional string id = 1;
 * @return {string}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.getId = function() {
  return /** @type {string} */ (jspb.Message.getFieldWithDefault(this, 1, ""));
};


/**
 * @param {string} value
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.setId = function(value) {
  return jspb.Message.setProto3StringField(this, 1, value);
};


/**
 * optional ProgressStatus progress_status = 2;
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation.ProgressStatus}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.getProgressStatus = function() {
  return /** @type {!proto.org.phenopackets.schema.v2.core.Interpretation.ProgressStatus} */ (jspb.Message.getFieldWithDefault(this, 2, 0));
};


/**
 * @param {!proto.org.phenopackets.schema.v2.core.Interpretation.ProgressStatus} value
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.setProgressStatus = function(value) {
  return jspb.Message.setProto3EnumField(this, 2, value);
};


/**
 * optional Diagnosis diagnosis = 3;
 * @return {?proto.org.phenopackets.schema.v2.core.Diagnosis}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.getDiagnosis = function() {
  return /** @type{?proto.org.phenopackets.schema.v2.core.Diagnosis} */ (
    jspb.Message.getWrapperField(this, proto.org.phenopackets.schema.v2.core.Diagnosis, 3));
};


/**
 * @param {?proto.org.phenopackets.schema.v2.core.Diagnosis|undefined} value
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation} returns this
*/
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.setDiagnosis = function(value) {
  return jspb.Message.setWrapperField(this, 3, value);
};


/**
 * Clears the message field making it undefined.
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.clearDiagnosis = function() {
  return this.setDiagnosis(undefined);
};


/**
 * Returns whether this field is set.
 * @return {boolean}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.hasDiagnosis = function() {
  return jspb.Message.getField(this, 3) != null;
};


/**
 * optional string summary = 4;
 * @return {string}
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.getSummary = function() {
  return /** @type {string} */ (jspb.Message.getFieldWithDefault(this, 4, ""));
};


/**
 * @param {string} value
 * @return {!proto.org.phenopackets.schema.v2.core.Interpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.Interpretation.prototype.setSummary = function(value) {
  return jspb.Message.setProto3StringField(this, 4, value);
};



/**
 * List of repeated fields within this message type.
 * @private {!Array<number>}
 * @const
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.repeatedFields_ = [2];



if (jspb.Message.GENERATE_TO_OBJECT) {
/**
 * Creates an object representation of this proto.
 * Field names that are reserved in JavaScript and will be renamed to pb_name.
 * Optional fields that are not set will be set to undefined.
 * To access a reserved field use, foo.pb_<name>, eg, foo.pb_default.
 * For the list of reserved names please see:
 *     net/proto2/compiler/js/internal/generator.cc#kKeyword.
 * @param {boolean=} opt_includeInstance Deprecated. whether to include the
 *     JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @return {!Object}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.toObject = function(opt_includeInstance) {
  return proto.org.phenopackets.schema.v2.core.Diagnosis.toObject(opt_includeInstance, this);
};


/**
 * Static version of the {@see toObject} method.
 * @param {boolean|undefined} includeInstance Deprecated. Whether to include
 *     the JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @param {!proto.org.phenopackets.schema.v2.core.Diagnosis} msg The msg instance to transform.
 * @return {!Object}
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.toObject = function(includeInstance, msg) {
  var f, obj = {
disease: (f = msg.getDisease()) && phenopackets_schema_v2_core_base_pb.OntologyClass.toObject(includeInstance, f),
genomicInterpretationsList: jspb.Message.toObjectList(msg.getGenomicInterpretationsList(),
    proto.org.phenopackets.schema.v2.core.GenomicInterpretation.toObject, includeInstance)
  };

  if (includeInstance) {
    obj.$jspbMessageInstance = msg;
  }
  return obj;
};
}


/**
 * Deserializes binary data (in protobuf wire format).
 * @param {jspb.ByteSource} bytes The bytes to deserialize.
 * @return {!proto.org.phenopackets.schema.v2.core.Diagnosis}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.deserializeBinary = function(bytes) {
  var reader = new jspb.BinaryReader(bytes);
  var msg = new proto.org.phenopackets.schema.v2.core.Diagnosis;
  return proto.org.phenopackets.schema.v2.core.Diagnosis.deserializeBinaryFromReader(msg, reader);
};


/**
 * Deserializes binary data (in protobuf wire format) from the
 * given reader into the given message object.
 * @param {!proto.org.phenopackets.schema.v2.core.Diagnosis} msg The message object to deserialize into.
 * @param {!jspb.BinaryReader} reader The BinaryReader to use.
 * @return {!proto.org.phenopackets.schema.v2.core.Diagnosis}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.deserializeBinaryFromReader = function(msg, reader) {
  while (reader.nextField()) {
    if (reader.isEndGroup()) {
      break;
    }
    var field = reader.getFieldNumber();
    switch (field) {
    case 1:
      var value = new phenopackets_schema_v2_core_base_pb.OntologyClass;
      reader.readMessage(value,phenopackets_schema_v2_core_base_pb.OntologyClass.deserializeBinaryFromReader);
      msg.setDisease(value);
      break;
    case 2:
      var value = new proto.org.phenopackets.schema.v2.core.GenomicInterpretation;
      reader.readMessage(value,proto.org.phenopackets.schema.v2.core.GenomicInterpretation.deserializeBinaryFromReader);
      msg.addGenomicInterpretations(value);
      break;
    default:
      reader.skipField();
      break;
    }
  }
  return msg;
};


/**
 * Serializes the message to binary data (in protobuf wire format).
 * @return {!Uint8Array}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.serializeBinary = function() {
  var writer = new jspb.BinaryWriter();
  proto.org.phenopackets.schema.v2.core.Diagnosis.serializeBinaryToWriter(this, writer);
  return writer.getResultBuffer();
};


/**
 * Serializes the given message to binary data (in protobuf wire
 * format), writing to the given BinaryWriter.
 * @param {!proto.org.phenopackets.schema.v2.core.Diagnosis} message
 * @param {!jspb.BinaryWriter} writer
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.serializeBinaryToWriter = function(message, writer) {
  var f = undefined;
  f = message.getDisease();
  if (f != null) {
    writer.writeMessage(
      1,
      f,
      phenopackets_schema_v2_core_base_pb.OntologyClass.serializeBinaryToWriter
    );
  }
  f = message.getGenomicInterpretationsList();
  if (f.length > 0) {
    writer.writeRepeatedMessage(
      2,
      f,
      proto.org.phenopackets.schema.v2.core.GenomicInterpretation.serializeBinaryToWriter
    );
  }
};


/**
 * optional OntologyClass disease = 1;
 * @return {?proto.org.phenopackets.schema.v2.core.OntologyClass}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.getDisease = function() {
  return /** @type{?proto.org.phenopackets.schema.v2.core.OntologyClass} */ (
    jspb.Message.getWrapperField(this, phenopackets_schema_v2_core_base_pb.OntologyClass, 1));
};


/**
 * @param {?proto.org.phenopackets.schema.v2.core.OntologyClass|undefined} value
 * @return {!proto.org.phenopackets.schema.v2.core.Diagnosis} returns this
*/
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.setDisease = function(value) {
  return jspb.Message.setWrapperField(this, 1, value);
};


/**
 * Clears the message field making it undefined.
 * @return {!proto.org.phenopackets.schema.v2.core.Diagnosis} returns this
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.clearDisease = function() {
  return this.setDisease(undefined);
};


/**
 * Returns whether this field is set.
 * @return {boolean}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.hasDisease = function() {
  return jspb.Message.getField(this, 1) != null;
};


/**
 * repeated GenomicInterpretation genomic_interpretations = 2;
 * @return {!Array<!proto.org.phenopackets.schema.v2.core.GenomicInterpretation>}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.getGenomicInterpretationsList = function() {
  return /** @type{!Array<!proto.org.phenopackets.schema.v2.core.GenomicInterpretation>} */ (
    jspb.Message.getRepeatedWrapperField(this, proto.org.phenopackets.schema.v2.core.GenomicInterpretation, 2));
};


/**
 * @param {!Array<!proto.org.phenopackets.schema.v2.core.GenomicInterpretation>} value
 * @return {!proto.org.phenopackets.schema.v2.core.Diagnosis} returns this
*/
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.setGenomicInterpretationsList = function(value) {
  return jspb.Message.setRepeatedWrapperField(this, 2, value);
};


/**
 * @param {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation=} opt_value
 * @param {number=} opt_index
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation}
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.addGenomicInterpretations = function(opt_value, opt_index) {
  return jspb.Message.addToRepeatedWrapperField(this, 2, opt_value, proto.org.phenopackets.schema.v2.core.GenomicInterpretation, opt_index);
};


/**
 * Clears the list making it empty but non-null.
 * @return {!proto.org.phenopackets.schema.v2.core.Diagnosis} returns this
 */
proto.org.phenopackets.schema.v2.core.Diagnosis.prototype.clearGenomicInterpretationsList = function() {
  return this.setGenomicInterpretationsList([]);
};



/**
 * Oneof group definitions for this message. Each group defines the field
 * numbers belonging to that group. When of these fields' value is set, all
 * other fields in the group are cleared. During deserialization, if multiple
 * fields are encountered for a group, only the last value seen will be kept.
 * @private {!Array<!Array<number>>}
 * @const
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.oneofGroups_ = [[3,4]];

/**
 * @enum {number}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.CallCase = {
  CALL_NOT_SET: 0,
  GENE: 3,
  VARIANT_INTERPRETATION: 4
};

/**
 * @return {proto.org.phenopackets.schema.v2.core.GenomicInterpretation.CallCase}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.getCallCase = function() {
  return /** @type {proto.org.phenopackets.schema.v2.core.GenomicInterpretation.CallCase} */(jspb.Message.computeOneofCase(this, proto.org.phenopackets.schema.v2.core.GenomicInterpretation.oneofGroups_[0]));
};



if (jspb.Message.GENERATE_TO_OBJECT) {
/**
 * Creates an object representation of this proto.
 * Field names that are reserved in JavaScript and will be renamed to pb_name.
 * Optional fields that are not set will be set to undefined.
 * To access a reserved field use, foo.pb_<name>, eg, foo.pb_default.
 * For the list of reserved names please see:
 *     net/proto2/compiler/js/internal/generator.cc#kKeyword.
 * @param {boolean=} opt_includeInstance Deprecated. whether to include the
 *     JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @return {!Object}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.toObject = function(opt_includeInstance) {
  return proto.org.phenopackets.schema.v2.core.GenomicInterpretation.toObject(opt_includeInstance, this);
};


/**
 * Static version of the {@see toObject} method.
 * @param {boolean|undefined} includeInstance Deprecated. Whether to include
 *     the JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @param {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} msg The msg instance to transform.
 * @return {!Object}
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.toObject = function(includeInstance, msg) {
  var f, obj = {
subjectOrBiosampleId: jspb.Message.getFieldWithDefault(msg, 1, ""),
interpretationStatus: jspb.Message.getFieldWithDefault(msg, 2, 0),
gene: (f = msg.getGene()) && phenopackets_vrsatile_v1_vrsatile_pb.GeneDescriptor.toObject(includeInstance, f),
variantInterpretation: (f = msg.getVariantInterpretation()) && proto.org.phenopackets.schema.v2.core.VariantInterpretation.toObject(includeInstance, f)
  };

  if (includeInstance) {
    obj.$jspbMessageInstance = msg;
  }
  return obj;
};
}


/**
 * Deserializes binary data (in protobuf wire format).
 * @param {jspb.ByteSource} bytes The bytes to deserialize.
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.deserializeBinary = function(bytes) {
  var reader = new jspb.BinaryReader(bytes);
  var msg = new proto.org.phenopackets.schema.v2.core.GenomicInterpretation;
  return proto.org.phenopackets.schema.v2.core.GenomicInterpretation.deserializeBinaryFromReader(msg, reader);
};


/**
 * Deserializes binary data (in protobuf wire format) from the
 * given reader into the given message object.
 * @param {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} msg The message object to deserialize into.
 * @param {!jspb.BinaryReader} reader The BinaryReader to use.
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.deserializeBinaryFromReader = function(msg, reader) {
  while (reader.nextField()) {
    if (reader.isEndGroup()) {
      break;
    }
    var field = reader.getFieldNumber();
    switch (field) {
    case 1:
      var value = /** @type {string} */ (reader.readString());
      msg.setSubjectOrBiosampleId(value);
      break;
    case 2:
      var value = /** @type {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus} */ (reader.readEnum());
      msg.setInterpretationStatus(value);
      break;
    case 3:
      var value = new phenopackets_vrsatile_v1_vrsatile_pb.GeneDescriptor;
      reader.readMessage(value,phenopackets_vrsatile_v1_vrsatile_pb.GeneDescriptor.deserializeBinaryFromReader);
      msg.setGene(value);
      break;
    case 4:
      var value = new proto.org.phenopackets.schema.v2.core.VariantInterpretation;
      reader.readMessage(value,proto.org.phenopackets.schema.v2.core.VariantInterpretation.deserializeBinaryFromReader);
      msg.setVariantInterpretation(value);
      break;
    default:
      reader.skipField();
      break;
    }
  }
  return msg;
};


/**
 * Serializes the message to binary data (in protobuf wire format).
 * @return {!Uint8Array}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.serializeBinary = function() {
  var writer = new jspb.BinaryWriter();
  proto.org.phenopackets.schema.v2.core.GenomicInterpretation.serializeBinaryToWriter(this, writer);
  return writer.getResultBuffer();
};


/**
 * Serializes the given message to binary data (in protobuf wire
 * format), writing to the given BinaryWriter.
 * @param {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} message
 * @param {!jspb.BinaryWriter} writer
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.serializeBinaryToWriter = function(message, writer) {
  var f = undefined;
  f = message.getSubjectOrBiosampleId();
  if (f.length > 0) {
    writer.writeString(
      1,
      f
    );
  }
  f = message.getInterpretationStatus();
  if (f !== 0.0) {
    writer.writeEnum(
      2,
      f
    );
  }
  f = message.getGene();
  if (f != null) {
    writer.writeMessage(
      3,
      f,
      phenopackets_vrsatile_v1_vrsatile_pb.GeneDescriptor.serializeBinaryToWriter
    );
  }
  f = message.getVariantInterpretation();
  if (f != null) {
    writer.writeMessage(
      4,
      f,
      proto.org.phenopackets.schema.v2.core.VariantInterpretation.serializeBinaryToWriter
    );
  }
};


/**
 * @enum {number}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus = {
  UNKNOWN_STATUS: 0,
  REJECTED: 1,
  CANDIDATE: 2,
  CONTRIBUTORY: 3,
  CAUSATIVE: 4
};

/**
 * optional string subject_or_biosample_id = 1;
 * @return {string}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.getSubjectOrBiosampleId = function() {
  return /** @type {string} */ (jspb.Message.getFieldWithDefault(this, 1, ""));
};


/**
 * @param {string} value
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.setSubjectOrBiosampleId = function(value) {
  return jspb.Message.setProto3StringField(this, 1, value);
};


/**
 * optional InterpretationStatus interpretation_status = 2;
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.getInterpretationStatus = function() {
  return /** @type {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus} */ (jspb.Message.getFieldWithDefault(this, 2, 0));
};


/**
 * @param {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation.InterpretationStatus} value
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.setInterpretationStatus = function(value) {
  return jspb.Message.setProto3EnumField(this, 2, value);
};


/**
 * optional org.ga4gh.vrsatile.v1.GeneDescriptor gene = 3;
 * @return {?proto.org.ga4gh.vrsatile.v1.GeneDescriptor}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.getGene = function() {
  return /** @type{?proto.org.ga4gh.vrsatile.v1.GeneDescriptor} */ (
    jspb.Message.getWrapperField(this, phenopackets_vrsatile_v1_vrsatile_pb.GeneDescriptor, 3));
};


/**
 * @param {?proto.org.ga4gh.vrsatile.v1.GeneDescriptor|undefined} value
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} returns this
*/
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.setGene = function(value) {
  return jspb.Message.setOneofWrapperField(this, 3, proto.org.phenopackets.schema.v2.core.GenomicInterpretation.oneofGroups_[0], value);
};


/**
 * Clears the message field making it undefined.
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.clearGene = function() {
  return this.setGene(undefined);
};


/**
 * Returns whether this field is set.
 * @return {boolean}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.hasGene = function() {
  return jspb.Message.getField(this, 3) != null;
};


/**
 * optional VariantInterpretation variant_interpretation = 4;
 * @return {?proto.org.phenopackets.schema.v2.core.VariantInterpretation}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.getVariantInterpretation = function() {
  return /** @type{?proto.org.phenopackets.schema.v2.core.VariantInterpretation} */ (
    jspb.Message.getWrapperField(this, proto.org.phenopackets.schema.v2.core.VariantInterpretation, 4));
};


/**
 * @param {?proto.org.phenopackets.schema.v2.core.VariantInterpretation|undefined} value
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} returns this
*/
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.setVariantInterpretation = function(value) {
  return jspb.Message.setOneofWrapperField(this, 4, proto.org.phenopackets.schema.v2.core.GenomicInterpretation.oneofGroups_[0], value);
};


/**
 * Clears the message field making it undefined.
 * @return {!proto.org.phenopackets.schema.v2.core.GenomicInterpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.clearVariantInterpretation = function() {
  return this.setVariantInterpretation(undefined);
};


/**
 * Returns whether this field is set.
 * @return {boolean}
 */
proto.org.phenopackets.schema.v2.core.GenomicInterpretation.prototype.hasVariantInterpretation = function() {
  return jspb.Message.getField(this, 4) != null;
};





if (jspb.Message.GENERATE_TO_OBJECT) {
/**
 * Creates an object representation of this proto.
 * Field names that are reserved in JavaScript and will be renamed to pb_name.
 * Optional fields that are not set will be set to undefined.
 * To access a reserved field use, foo.pb_<name>, eg, foo.pb_default.
 * For the list of reserved names please see:
 *     net/proto2/compiler/js/internal/generator.cc#kKeyword.
 * @param {boolean=} opt_includeInstance Deprecated. whether to include the
 *     JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @return {!Object}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.toObject = function(opt_includeInstance) {
  return proto.org.phenopackets.schema.v2.core.VariantInterpretation.toObject(opt_includeInstance, this);
};


/**
 * Static version of the {@see toObject} method.
 * @param {boolean|undefined} includeInstance Deprecated. Whether to include
 *     the JSPB instance for transitional soy proto support:
 *     http://goto/soy-param-migration
 * @param {!proto.org.phenopackets.schema.v2.core.VariantInterpretation} msg The msg instance to transform.
 * @return {!Object}
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.toObject = function(includeInstance, msg) {
  var f, obj = {
acmgPathogenicityClassification: jspb.Message.getFieldWithDefault(msg, 1, 0),
therapeuticActionability: jspb.Message.getFieldWithDefault(msg, 2, 0),
variationDescriptor: (f = msg.getVariationDescriptor()) && phenopackets_vrsatile_v1_vrsatile_pb.VariationDescriptor.toObject(includeInstance, f)
  };

  if (includeInstance) {
    obj.$jspbMessageInstance = msg;
  }
  return obj;
};
}


/**
 * Deserializes binary data (in protobuf wire format).
 * @param {jspb.ByteSource} bytes The bytes to deserialize.
 * @return {!proto.org.phenopackets.schema.v2.core.VariantInterpretation}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.deserializeBinary = function(bytes) {
  var reader = new jspb.BinaryReader(bytes);
  var msg = new proto.org.phenopackets.schema.v2.core.VariantInterpretation;
  return proto.org.phenopackets.schema.v2.core.VariantInterpretation.deserializeBinaryFromReader(msg, reader);
};


/**
 * Deserializes binary data (in protobuf wire format) from the
 * given reader into the given message object.
 * @param {!proto.org.phenopackets.schema.v2.core.VariantInterpretation} msg The message object to deserialize into.
 * @param {!jspb.BinaryReader} reader The BinaryReader to use.
 * @return {!proto.org.phenopackets.schema.v2.core.VariantInterpretation}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.deserializeBinaryFromReader = function(msg, reader) {
  while (reader.nextField()) {
    if (reader.isEndGroup()) {
      break;
    }
    var field = reader.getFieldNumber();
    switch (field) {
    case 1:
      var value = /** @type {!proto.org.phenopackets.schema.v2.core.AcmgPathogenicityClassification} */ (reader.readEnum());
      msg.setAcmgPathogenicityClassification(value);
      break;
    case 2:
      var value = /** @type {!proto.org.phenopackets.schema.v2.core.TherapeuticActionability} */ (reader.readEnum());
      msg.setTherapeuticActionability(value);
      break;
    case 3:
      var value = new phenopackets_vrsatile_v1_vrsatile_pb.VariationDescriptor;
      reader.readMessage(value,phenopackets_vrsatile_v1_vrsatile_pb.VariationDescriptor.deserializeBinaryFromReader);
      msg.setVariationDescriptor(value);
      break;
    default:
      reader.skipField();
      break;
    }
  }
  return msg;
};


/**
 * Serializes the message to binary data (in protobuf wire format).
 * @return {!Uint8Array}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.serializeBinary = function() {
  var writer = new jspb.BinaryWriter();
  proto.org.phenopackets.schema.v2.core.VariantInterpretation.serializeBinaryToWriter(this, writer);
  return writer.getResultBuffer();
};


/**
 * Serializes the given message to binary data (in protobuf wire
 * format), writing to the given BinaryWriter.
 * @param {!proto.org.phenopackets.schema.v2.core.VariantInterpretation} message
 * @param {!jspb.BinaryWriter} writer
 * @suppress {unusedLocalVariables} f is only used for nested messages
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.serializeBinaryToWriter = function(message, writer) {
  var f = undefined;
  f = message.getAcmgPathogenicityClassification();
  if (f !== 0.0) {
    writer.writeEnum(
      1,
      f
    );
  }
  f = message.getTherapeuticActionability();
  if (f !== 0.0) {
    writer.writeEnum(
      2,
      f
    );
  }
  f = message.getVariationDescriptor();
  if (f != null) {
    writer.writeMessage(
      3,
      f,
      phenopackets_vrsatile_v1_vrsatile_pb.VariationDescriptor.serializeBinaryToWriter
    );
  }
};


/**
 * optional AcmgPathogenicityClassification acmg_pathogenicity_classification = 1;
 * @return {!proto.org.phenopackets.schema.v2.core.AcmgPathogenicityClassification}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.getAcmgPathogenicityClassification = function() {
  return /** @type {!proto.org.phenopackets.schema.v2.core.AcmgPathogenicityClassification} */ (jspb.Message.getFieldWithDefault(this, 1, 0));
};


/**
 * @param {!proto.org.phenopackets.schema.v2.core.AcmgPathogenicityClassification} value
 * @return {!proto.org.phenopackets.schema.v2.core.VariantInterpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.setAcmgPathogenicityClassification = function(value) {
  return jspb.Message.setProto3EnumField(this, 1, value);
};


/**
 * optional TherapeuticActionability therapeutic_actionability = 2;
 * @return {!proto.org.phenopackets.schema.v2.core.TherapeuticActionability}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.getTherapeuticActionability = function() {
  return /** @type {!proto.org.phenopackets.schema.v2.core.TherapeuticActionability} */ (jspb.Message.getFieldWithDefault(this, 2, 0));
};


/**
 * @param {!proto.org.phenopackets.schema.v2.core.TherapeuticActionability} value
 * @return {!proto.org.phenopackets.schema.v2.core.VariantInterpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.setTherapeuticActionability = function(value) {
  return jspb.Message.setProto3EnumField(this, 2, value);
};


/**
 * optional org.ga4gh.vrsatile.v1.VariationDescriptor variation_descriptor = 3;
 * @return {?proto.org.ga4gh.vrsatile.v1.VariationDescriptor}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.getVariationDescriptor = function() {
  return /** @type{?proto.org.ga4gh.vrsatile.v1.VariationDescriptor} */ (
    jspb.Message.getWrapperField(this, phenopackets_vrsatile_v1_vrsatile_pb.VariationDescriptor, 3));
};


/**
 * @param {?proto.org.ga4gh.vrsatile.v1.VariationDescriptor|undefined} value
 * @return {!proto.org.phenopackets.schema.v2.core.VariantInterpretation} returns this
*/
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.setVariationDescriptor = function(value) {
  return jspb.Message.setWrapperField(this, 3, value);
};


/**
 * Clears the message field making it undefined.
 * @return {!proto.org.phenopackets.schema.v2.core.VariantInterpretation} returns this
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.clearVariationDescriptor = function() {
  return this.setVariationDescriptor(undefined);
};


/**
 * Returns whether this field is set.
 * @return {boolean}
 */
proto.org.phenopackets.schema.v2.core.VariantInterpretation.prototype.hasVariationDescriptor = function() {
  return jspb.Message.getField(this, 3) != null;
};


/**
 * @enum {number}
 */
proto.org.phenopackets.schema.v2.core.AcmgPathogenicityClassification = {
  NOT_PROVIDED: 0,
  BENIGN: 1,
  LIKELY_BENIGN: 2,
  UNCERTAIN_SIGNIFICANCE: 3,
  LIKELY_PATHOGENIC: 4,
  PATHOGENIC: 5
};

/**
 * @enum {number}
 */
proto.org.phenopackets.schema.v2.core.TherapeuticActionability = {
  UNKNOWN_ACTIONABILITY: 0,
  NOT_ACTIONABLE: 1,
  ACTIONABLE: 2
};

goog.object.extend(exports, proto.org.phenopackets.schema.v2.core);