API Documentation

The complete API documentation for phenopackets-js can be found here:

View API Documentation →

Core Classes

The main classes you’ll work with include:

• Phenopacket - The main container for phenotypic information
• Individual - Information about the subject
• Disease - Disease/disorder information
• PhenotypicFeature - Individual phenotype observations
• Measurement - Quantitative measurements
• MetaData - Version and provenance information

Example Usage

const { Phenopacket, Individual, PhenotypicFeature } = require('@berntpopp/phenopackets-js');

// Create a new phenopacket
const phenopacket = new Phenopacket();
phenopacket.setId('example-id');

// Add subject information
const individual = new Individual();
individual.setId('patient-1');
individual.setSex(1); // FEMALE
phenopacket.setSubject(individual);

// Add a phenotypic feature
const feature = new PhenotypicFeature();
feature.setType({
  id: 'HP:0001250',
  label: 'Seizure',
});
phenopacket.addPhenotypicFeatures(feature);

For complete API documentation including all available classes, methods, and their parameters, please visit the API Documentation.